U
    V f                     @   s   d dl mZ d dlZd dlZd dlZd dlZd dlmZ ddddddZ	ddd	d
ddZ
dd Zdd Zdd Zdd Zdd Zdd ZefddZdd Zdd Zdd Zdd  Zd!d" Zd#d$ Zd%d& ZdS )'    )	euclideanN)DRAWINGS_DIR   
   )	main rootmain root baselateral rootzinsertion pointlateral root tipmkbrc                 C   s6   |}t | |s2| |}t|dks(t|d }q|S )zX
    Given an arbor and a lateral root tip, find the closest point on the main root
       r   )is_on_main_root	neighborslenAssertionError)GZlateral_root_tipcurrr    r   c/home/dh_an3skk/arjun-chandrasekhar-teaching.com/tomato/backend/backend_plant_architecture/utils.pyclosest_main_root_point   s    


r   c                 C   s@   |   D ]2}| j | d dkr| |dkrd| j | d< qdS )z(
    relabels all lateral root tips
    labelr   r   r	   N)nodesdegreer   ur   r   r   relabel_lateral_root_tips   s     r   c                 C   s&   |  || t||| | | d< d S )Nlength)add_edger   )r   r   vr   r   r   connect_points!   s    r!   c                 C   s   t td| j| d S )Nz!(main root.*)|(insertion point.*)r   )anyrefindallr   r   r   r   r   r   %   s    r   c                 C   s   t | dd dS )Nc                 S   s   | d S )Nr   r   )pr   r   r   <lambda>)       z!sort_by_y_coord.<locals>.<lambda>)key)sorted)pointsr   r   r   sort_by_y_coord(   s    r+   c                 C   s   g }|   D ]}t| |rt| qt|}tt|d D ]P}|| }||d  }| |sdt| |srt| 	||rtt
| || q>dS )zK
    Method to connect every insertion point to the previous insertion
    r   N)r   r   Z
insertionsappendr+   ranger   has_noder   has_edger!   )r   root_pointsr   iZroot_point1Zroot_point2r   r   r   connect_main_root+   s    
r2   c                 C   s2  i }g }g }g }t d}t d}t d}t d}	|  D ]z}
|
\}}||f||
< t||}t||}t||}t|	|}	||
 |t| j|
 d   |t| j|
 d   q8t  t	j
| ||||d t	j| |ddd t  t }|d td	|  tjd
|| jd f dd t  d S )Ninfz-infr   )posnodelist
node_color	node_size   g)r4   width
edge_coloroffzmkdir -p %sz	%s/%s.pdf
arbor namepdf)format)floatr   minmaxr,   	NODE_SIZE
NODE_COLORpylabfigurenxdraw_networkx_nodesdraw_networkx_edgesdrawgcaaxisossystemZsavefiggraphclose)r   outdirr4   r5   r7   r6   xminxmaxyminymaxr   xyaxr   r   r   
draw_arbor>   s6    





rY   c                  C   s   d} d}d}d}d}t  }t| ||||gdddddgD ] \}}|| ||j| d< q:t|| | t||| t|| | t|| | d	|j|  d< | |jd	< t| d
|jd< |S )Nr   r   r   r   )r            r8   r   r   r   r   ztoy-networkr=   rG   Graphzipadd_noder   r!   rO   r   Z	root_baseroot1root2ZlateralZlateral2r   r   r   r   r   r   toy_networke   s(    


ri   c                  C   s   d} d}d}d}d}t  }t| ||||gdddddgD ] \}}|| ||j| d< q:t|| | t||| t|| | t|| | d	|j|  d< | |jd	< t| d
|jd< |S )NrZ   r[   )g      ?   r]   r`   r   r   r   r   ztoy-network2r=   rb   rf   r   r   r   toy_network2   s(    


rk   c                 C   sF   |  d} |  d} | d}|d }| d}|d  d}||fS )N_z.rsmlr   dayra   ZSaltstripsplit)imageimage_itemsrm   Zpicture_numr   r   r   image_metadata   s    



rs   c                 C   sF   |  d}|d }|d }|d }d }t|dkr:|d }||||fS )Nrl   r   r   r\   r_   )rp   r   )Z	root_nameZroot_name_itemsZgenotypeZ	replicate	conditionZhormoner   r   r   root_name_metadata   s    
ru   c                 C   s   |  d} | d}|d S )Nrl   r   rn   )rq   rr   r   r   r   get_day   s    

rv   c                 C   s   t | }d||f S )Nz%s_%s)rv   )rq   Zmain_root_namerm   r   r   r   
arbor_name   s    rw   c                 C   s*   |  d}|d  }|d }d||f S )Nrl   r   r   z%s%s)rp   
capitalize)fnameZfname_itemsZpimpiexpr   r   r   get_experiment   s    
r{   )scipy.spatial.distancer   networkxrG   rE   rM   r#   	constantsr   rC   rD   r   r   r!   r   r+   r2   rY   ri   rk   rs   ru   rv   rw   r{   r   r   r   r   <module>   s*   
'